Vladimir Reinharz

Me from really close
Me from really close

You can contact me using one of the following emails:

vladimir.reinharz [at] mail.mcgill.ca
vreinh [at] cs.mcgill.ca
vreinharz [at] gmail.com

Ph.D. student at McGill.
Alexander Graham Bell Canada Scholar (CGS D3) 2013-2016
I am a member of the computational structural biology lab of Jérôme Waldispühl at McGill since March 2010.
I visited the Laboratoire de Recherche en Informatique under the supervision of Alain Denise at Paris-Sud from January to June 2013 thanks to a TEE Erasmus scholarship.

Publications

  1. V. Reinharz, Y. Ponty, J. Waldispühl, Using structural and evolutionary information to detect and correct pyrosequencing errors in non-coding RNAs
    Extended version of A linear inside-outside algorithm for correcting sequencing errors in structured RNAs
    In the Journal of Computational Biology, 2013.
    DOI: 10.1089/cmb.2013.0085, Preprint
  2. V. Reinharz, Y. Ponty, J. Waldispühl, A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotides distribution
    In proceedings of the 21st Annual International Conference on Intelligent Systems for Molecual Biology / 12th European Conference on Computational Biology (ISMB/ECCB), Bioinformatics, 2013. [Acceptance rate 16%]
    DOI: 10.1093/bioinformatics/btt217, Preprint
    Recording of the presentation
  3. V. Reinharz, Y. Ponty, J. Waldispühl, A linear inside-outside algorithm for correcting sequencing errors in structured RNAs
    In proceedings of the 17th Annual International Conference on Research in Computational Molecular Biology (RECOMB), Research in Computational Molecular Biology, Lecture Notes in Computer Science, 2013. [Acceptance rate 20%]
    DOI: 10.1007/978-3-642-37195-0_17, Preprint
    Picture
  4. V. Reinharz, F. Major, J. Waldispühl, Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure
    In proceedings of the 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Bioinformatics, 2012. [Acceptance rate 13%]
    DOI: 10.1093/bioinformatics/BTS226, Preprint
    Recording of the presentation