Vladimir Reinharz

Me from really close

You can contact me using one of the following emails:

I am a member of the computational structural biology lab of Jérôme Waldispühl at McGill since March 2010.
I am visiting the Laboratoire de Recherche en Informatique under the supervision of Alain Denise at Paris-Sud from January to June 2013 thanks to a TEE Erasmus scholarship.

Publications

1. V. Reinharz, Y. Ponty, J. Waldispühl, A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotides distribution
   To appear in proceedings of the 21st Annual International Conference on Intelligent Systems for Molecual Biology / 12th European Conference on Computational Biology (ISMB/ECCB), 2013. [Acceptance rate 16%]
   Preprint
   
2. V. Reinharz, Y. Ponty, J. Waldispühl, A linear inside-outside algorithm for correcting sequencing errors in structured RNAs
   In proceedings of the 17th Annual International Conference on Research in Computational Molecular Biology (RECOMB), Research in Computational Molecular Biology, LNCS, 2013. [Acceptance rate 20%]
   DOI: 10.1007/978-3-642-37195-0_17, Preprint
   
3. V. Reinharz, F. Major, J. Waldispühl, Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure
   In proceedings of the 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Bioinformatics, 2012. [Acceptance rate 13%]
   DOI: 10.1093/bioinformatics/BTS226, Preprint
   Recording of the presentation